Metagenomics

Publication: "Diabetes-associated alterations in the cecal microbiome and metabolome are independent of diet or environment in the UC Davis Type 2 Diabetes Mellitus Rat model"

November 14, 2018

Piccolo, B.D., Graham, J.L., Stanhope, K.L., Nookaew, I., Mercer, K.E., Chintapalli, S.V., Wankhade, U.D., Shankar, K., Havel, P.J., Adams, S.H. 2018. Diabetes-associated alterations in the cecal microbiome and metabolome are independent of diet or environment in the UC Davis type 2-diabetes mellitus rat model. American Journal of Physiology - Endocrinology and Metabolism. https://doi.org/10.1152/ajpendo.00203.2018.

Publication: "Biodiversity of cyanobacteria and other aquatic microorganisms across a freshwater to brackish water gradient determined by shotgun metagenomic sequencing analysis in the San Francisco Estuary, USA"

October 03, 2018

Kurobe T, Lehman PW, Hammock BG, Bolotaolo MB, Lesmeister S, Teh SJ (2018) Biodiversity of cyanobacteria and other aquatic microorganisms across a freshwater to brackish water gradient determined by shotgun metagenomic sequencing analysis in the San Francisco Estuary, USA. PLoS ONE 13(9): e0203953. https://doi.org/10.1371/journal.pone.0203953

Publication: "Characterization of novel glycosyl hydrolases discovered by cell wall glycan directed monoclonal antibody screening and metagenome analysis of maize aerial root mucilage"

October 03, 2018

Pozzo T, Higdon SM, Pattathil S, Hahn MG, Bennett AB (2018) Characterization of novel glycosyl hydrolases discovered by cell wall glycan directed monoclonal antibody screening and metagenome analysis of maize aerial root mucilage. PLoS ONE 13(9): e0204525. https://doi.org/10.1371/journal.pone.0204525

Publication: "Gut microbial and metabolomic profiles after fecal microbiota transplantation in pediatric ulcerative colitis patients"

July 17, 2018

David J Nusbaum, Fengzhu Sun, Jie Ren, Zifan Zhu, Natalie Ramsy, Nicholas Pervolarakis, Sachin Kunde, Whitney England, Bei Gao, Oliver Fiehn, Sonia Michail, Katrine Whiteson; Gut microbial and metabolomic profiles after fecal microbiota transplantation in pediatric ulcerative colitis patients, FEMS Microbiology Ecology, Volume 94, Issue 9, 1 September 2018, fiy133, https://doi.org/10.1093/femsec/fiy133